To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PanVizGenerator")

In most cases, you don't need to download the package archive at all.

PanVizGenerator

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see PanVizGenerator.

Generate PanViz visualisations from your pangenome

Bioconductor version: 3.3

PanViz is a JavaScript based visualisation tool for functionaly annotated pangenomes. PanVizGenerator is a companion for PanViz that facilitates the necessary data preprocessing step necessary to create a working PanViz visualization. The output is fully self-contained so the recipient of the visualization does not need R or PanVizGenerator installed.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("PanVizGenerator")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PanVizGenerator")

Documentation

HTML	R Script	Creating PanViz visualizations with PanVizGenerator
PDF		Reference Manual
Text		NEWS

Details

biocViews	ComparativeGenomics, GUI, Software, Visualization
Version	1.0.3
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	GPL (>= 2)
Depends	methods
Imports	shiny, tools, jsonlite, pcaMethods, FindMyFriends, igraph, stats, utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, digest
SystemRequirements
Enhances
URL	https://github.com/thomasp85/PanVizGenerator
BugReports	https://github.com/thomasp85/PanVizGenerator/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	PanVizGenerator_1.0.3.tar.gz
Windows Binary	PanVizGenerator_1.0.3.zip
Mac OS X 10.9 (Mavericks)	PanVizGenerator_1.0.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/PanVizGenerator/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/PanVizGenerator/
Package Downloads Report	Download Stats

Documentation »

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