To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ROTS")

In most cases, you don't need to download the package archive at all.

ROTS

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ROTS.

Reproducibility-Optimized Test Statistic

Bioconductor version: 3.3

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Fatemeh Seyednasrollah <fatsey at utu.fi>

Citation (from within R, enter citation("ROTS")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ROTS")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")

PDF	R Script	ROTS: Reproducibility Optimized Test Statistic
PDF		Reference Manual
Text		NEWS

biocViews	DifferentialExpression, GeneExpression, Microarray, Proteomics, RNASeq, Software
Version	1.0.0
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	GPL (>= 2)
Depends	R (>= 3.3)
Imports	Rcpp, stats, Biobase, methods
LinkingTo	Rcpp
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	PECA
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	ROTS_1.0.0.tar.gz
Windows Binary	ROTS_1.0.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)	ROTS_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ROTS/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/ROTS/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: