To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVSeq")
In most cases, you don't need to download the package archive at all.
RUVSeq
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see RUVSeq.
Remove Unwanted Variation from RNA-Seq Data
Bioconductor version: 3.3
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
Author: Davide Risso [aut, cre, cph], Sandrine Dudoit [aut], Lorena Pantano [ctb], Kamil Slowikowski [ctb]
Maintainer: Davide Risso <risso.davide at gmail.com>
Citation (from within R,
enter citation("RUVSeq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RUVSeq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RUVSeq")
| R Script | RUVSeq: Remove Unwanted Variation from RNA-Seq Data | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, Preprocessing, RNASeq, Software |
| Version | 1.6.2 |
| In Bioconductor since | BioC 3.0 (R-3.1) (2 years) |
| License | Artistic-2.0 |
| Depends | Biobase, EDASeq(>= 1.99.1), edgeR |
| Imports | methods, MASS |
| LinkingTo | |
| Suggests | BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2 |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/drisso/RUVSeq |
| BugReports | https://github.com/drisso/RUVSeq/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RUVSeq_1.6.2.tar.gz |
| Windows Binary | RUVSeq_1.6.2.zip |
| Mac OS X 10.9 (Mavericks) | RUVSeq_1.6.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RUVSeq/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/RUVSeq/ |
| Package Downloads Report | Download Stats |
Documentation »
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