To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("affxparser")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see affxparser.
Bioconductor version: 3.3
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R,
enter citation("affxparser")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("affxparser")
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software |
Version | 1.44.0 |
In Bioconductor since | BioC 1.7 (R-2.2) (11 years) |
License | LGPL (>= 2) |
Depends | R (>= 2.6.0) |
Imports | |
LinkingTo | |
Suggests | R.oo (>= 1.20.0), R.utils (>= 2.2.0), AffymetrixDataTestFiles |
SystemRequirements | |
Enhances | |
URL | https://github.com/HenrikBengtsson/affxparser |
BugReports | https://github.com/HenrikBengtsson/affxparser/issues |
Depends On Me | ITALICS, pdInfoBuilder, rMAT, Starr |
Imports Me | affyILM, AffyTiling, cn.farms, GeneRegionScan, ITALICS, oligo, rMAT |
Suggests Me | TIN |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | affxparser_1.44.0.tar.gz |
Windows Binary | affxparser_1.44.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | affxparser_1.44.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/affxparser/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/affxparser/ |
Package Downloads Report | Download Stats |
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