To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("arrayQualityMetrics")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see arrayQualityMetrics.
Bioconductor version: 3.3
This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.
Author: Audrey Kauffmann, Wolfgang Huber
Maintainer: Audrey Kauffmann <akauffmann.bioinfo at gmail.com>
Citation (from within R,
enter citation("arrayQualityMetrics")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("arrayQualityMetrics")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("arrayQualityMetrics")
R Script | Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output | |
R Script | Introduction: microarray quality assessment with arrayQualityMetrics | |
Reference Manual | ||
Text | NEWS |
biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel |
Version | 3.28.2 |
In Bioconductor since | BioC 2.1 (R-2.6) (9 years) |
License | LGPL (>= 2) |
Depends | |
Imports | affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML |
LinkingTo | |
Suggests | ALLMLL, CCl4, BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | EGAD |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | arrayQualityMetrics_3.28.2.tar.gz |
Windows Binary | arrayQualityMetrics_3.28.2.zip |
Mac OS X 10.9 (Mavericks) | arrayQualityMetrics_3.28.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/arrayQualityMetrics/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/arrayQualityMetrics/ |
Package Downloads Report | Download Stats |
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