To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bsseq")

In most cases, you don't need to download the package archive at all.

bsseq

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see bsseq.

Analyze, manage and store bisulfite sequencing data

Bioconductor version: 3.3

A collection of tools for analyzing and visualizing bisulfite sequencing data.

Author: Kasper Daniel Hansen [aut, cre], Peter Hickey [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("bsseq")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bsseq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bsseq")

biocViews	DNAMethylation, Software
Version	1.8.2
In Bioconductor since	BioC 2.11 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 3.3), methods, BiocGenerics, GenomicRanges(>= 1.23.7), SummarizedExperiment(>= 0.1.1), parallel, limma
Imports	IRanges(>= 2.5.17), GenomeInfoDb, scales, stats, graphics, Biobase, locfit, gtools, data.table, S4Vectors, R.utils (>= 2.0.0), matrixStats (>= 0.50.0), permute
LinkingTo
Suggests	RUnit, bsseqData, BiocStyle, knitr
SystemRequirements
Enhances
URL	https://github.com/kasperdanielhansen/bsseq
BugReports	https://github.com/kasperdanielhansen/bsseq/issues
Depends On Me	bsseqData, DSS
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	bsseq_1.8.2.tar.gz
Windows Binary	bsseq_1.8.2.zip
Mac OS X 10.9 (Mavericks)	bsseq_1.8.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/bsseq/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/bsseq/
Package Downloads Report	Download Stats

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