To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("diffloop")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see diffloop.
Bioconductor version: 3.3
A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments.
Author: Caleb Lareau [aut, cre], Martin Aryee [aut]
Maintainer: Caleb Lareau <caleblareau at g.harvard.edu>
Citation (from within R,
enter citation("diffloop")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("diffloop")
HTML | R Script | diffloop: Identifying differential DNA loops from ChIA-PET data |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DataImport, DataRepresentation, GO, Preprocessing, QualityControl, Software, Visualization |
Version | 1.0.2 |
In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
License | MIT + file LICENSE |
Depends | |
Imports | methods, GenomicRanges, foreach, plyr, dplyr, reshape2, ggplot2, matrixStats, Sushi, edgeR, locfit, statmod, biomaRt, GenomeInfoDb, S4Vectors, IRanges, grDevices, graphics, stats, utils, Biobase, readr |
LinkingTo | |
Suggests | diffloopdata, knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | diffloop_1.0.2.tar.gz |
Windows Binary | diffloop_1.0.2.zip |
Mac OS X 10.9 (Mavericks) | diffloop_1.0.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/diffloop/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/diffloop/ |
Package Downloads Report | Download Stats |
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