To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("diffloop")

In most cases, you don't need to download the package archive at all.

diffloop

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see diffloop.

Differential DNA loop calling from ChIA-PET data

Bioconductor version: 3.3

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments.

Author: Caleb Lareau [aut, cre], Martin Aryee [aut]

Maintainer: Caleb Lareau <caleblareau at g.harvard.edu>

Citation (from within R, enter citation("diffloop")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("diffloop")

HTML	R Script	diffloop: Identifying differential DNA loops from ChIA-PET data
PDF		Reference Manual
Text		NEWS
Text		LICENSE

biocViews	DataImport, DataRepresentation, GO, Preprocessing, QualityControl, Software, Visualization
Version	1.0.2
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	MIT + file LICENSE
Depends
Imports	methods, GenomicRanges, foreach, plyr, dplyr, reshape2, ggplot2, matrixStats, Sushi, edgeR, locfit, statmod, biomaRt, GenomeInfoDb, S4Vectors, IRanges, grDevices, graphics, stats, utils, Biobase, readr
LinkingTo
Suggests	diffloopdata, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	diffloop_1.0.2.tar.gz
Windows Binary	diffloop_1.0.2.zip
Mac OS X 10.9 (Mavericks)	diffloop_1.0.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/diffloop/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/diffloop/
Package Downloads Report	Download Stats

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