To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("doppelgangR")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see doppelgangR.
Bioconductor version: 3.3
The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).
Author: Levi Waldron, Markus Riester, Marcel Ramos
Maintainer: Levi Waldron <lwaldron.research at gmail.com>
Citation (from within R,
enter citation("doppelgangR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("doppelgangR")
HTML | R Script | doppelgangR vignette |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, Microarray, QualityControl, RNASeq, Software |
Version | 1.0.2 |
In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
License | GPL (>=2.0) |
Depends | R (>= 3.3), Biobase, BiocParallel |
Imports | sva, impute, digest, mnormt, methods, grDevices, graphics, stats, utils |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, curatedOvarianData, ROCR, pROC, RUnit, simulatorZ, proxy |
SystemRequirements | |
Enhances | |
URL | https://github.com/lwaldron/doppelgangR |
BugReports | https://github.com/lwaldron/doppelgangR/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | doppelgangR_1.0.2.tar.gz |
Windows Binary | doppelgangR_1.0.2.zip |
Mac OS X 10.9 (Mavericks) | doppelgangR_1.0.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/doppelgangR/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/doppelgangR/ |
Package Downloads Report | Download Stats |
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