To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epivizrStandalone")

In most cases, you don't need to download the package archive at all.

epivizrStandalone

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see epivizrStandalone.

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: 3.3

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epivizrStandalone")

Documentation

HTML		Introduction to epivizrStandalone
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GUI, Infrastructure, Software, Visualization
Version	1.0.4
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 3.2.3), epivizr(>= 1.99.5), methods
Imports	git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors
LinkingTo
Suggests	testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	epivizrStandalone_1.0.4.tar.gz
Windows Binary	epivizrStandalone_1.0.4.zip
Mac OS X 10.9 (Mavericks)	epivizrStandalone_1.0.4.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/epivizrStandalone/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/epivizrStandalone/
Package Downloads Report	Download Stats

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