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This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see fabia.
Bioconductor version: 3.3
Biclustering by "Factor Analysis for Bicluster Acquisition" (FABIA). FABIA is a model-based technique for biclustering, that is clustering rows and columns simultaneously. Biclusters are found by factor analysis where both the factors and the loading matrix are sparse. FABIA is a multiplicative model that extracts linear dependencies between samples and feature patterns. It captures realistic non-Gaussian data distributions with heavy tails as observed in gene expression measurements. FABIA utilizes well understood model selection techniques like the EM algorithm and variational approaches and is embedded into a Bayesian framework. FABIA ranks biclusters according to their information content and separates spurious biclusters from true biclusters. The code is written in C.
Author: Sepp Hochreiter <hochreit at bioinf.jku.at>
Maintainer: Sepp Hochreiter <hochreit at bioinf.jku.at>
Citation (from within R,
enter citation("fabia")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("fabia")
To view documentation for the version of this package installed in your system, start R and enter:
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R Script | FABIA: Manual for the R package | |
Reference Manual | ||
Text | NEWS |
biocViews | Clustering, DifferentialExpression, Microarray, MultipleComparison, Software, StatisticalMethod, Visualization |
Version | 2.18.1 |
In Bioconductor since | BioC 2.7 (R-2.12) (6 years) |
License | LGPL (>= 2.1) |
Depends | R (>= 2.8.0), Biobase |
Imports | methods, graphics, grDevices, stats, utils |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | http://www.bioinf.jku.at/software/fabia/fabia.html |
Depends On Me | hapFabia |
Imports Me | |
Suggests Me | fabiaData |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | fabia_2.18.1.tar.gz |
Windows Binary | fabia_2.18.1.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | fabia_2.18.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/fabia/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/fabia/ |
Package Downloads Report | Download Stats |
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