To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ffpe")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ffpe.
Bioconductor version: 3.3
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Author: Levi Waldron
Maintainer: Levi Waldron <levi.waldron at hunter.cuny.edu>
Citation (from within R,
enter citation("ffpe")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ffpe")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ffpe")
R Script | ffpe package user guide | |
Reference Manual |
biocViews | GeneExpression, Microarray, QualityControl, Software |
Version | 1.16.0 |
In Bioconductor since | BioC 2.10 (R-2.15) (4.5 years) |
License | GPL (>2) |
Depends | R (>= 2.10.0), TTR, methods |
Imports | Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc |
LinkingTo | |
Suggests | genefilter, ffpeExampleData |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | ffpe_1.16.0.tar.gz |
Windows Binary | ffpe_1.16.0.zip |
Mac OS X 10.9 (Mavericks) | ffpe_1.16.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ffpe/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/ffpe/ |
Package Downloads Report | Download Stats |
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