To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ffpe")
In most cases, you don't need to download the package archive at all.
ffpe
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ffpe.
Quality assessment and control for FFPE microarray expression data
Bioconductor version: 3.3
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Author: Levi Waldron
Maintainer: Levi Waldron <levi.waldron at hunter.cuny.edu>
Citation (from within R,
enter citation("ffpe")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ffpe")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ffpe")
| R Script | ffpe package user guide | |
| Reference Manual |
Details
| biocViews | GeneExpression, Microarray, QualityControl, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4.5 years) |
| License | GPL (>2) |
| Depends | R (>= 2.10.0), TTR, methods |
| Imports | Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc |
| LinkingTo | |
| Suggests | genefilter, ffpeExampleData |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ffpe_1.16.0.tar.gz |
| Windows Binary | ffpe_1.16.0.zip |
| Mac OS X 10.9 (Mavericks) | ffpe_1.16.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ffpe/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/ffpe/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
