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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genoset")
In most cases, you don't need to download the package archive at all.
genoset
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see genoset.
A RangedSummarizedExperiment with methods for copy number analysis
Bioconductor version: 3.3
GenoSet provides an extension of the RangedSummarizedExperiment class with additional API features. This class provides convenient and fast methods for working with segmented genomic data. Additionally, GenoSet provides the class RleDataFrame which stores runs of data along the genome for multiple samples and provides very fast summaries of arbitrary row sets (regions of the genome).
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty at gene.com>
Citation (from within R,
enter citation("genoset")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genoset")
Documentation
| HTML | R Script | genoset |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CopyNumberVariation, DataRepresentation, Infrastructure, Microarray, SNP, Software |
| Version | 1.28.2 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), BiocGenerics(>= 0.11.3), GenomicRanges(>= 1.17.19), SummarizedExperiment(>= 1.1.6) |
| Imports | S4Vectors(>= 0.9.25), GenomeInfoDb(>= 1.1.3), IRanges(>= 2.5.12), methods, graphics |
| LinkingTo | |
| Suggests | RUnit, knitr, BiocStyle, rmarkdown, DNAcopy, stats, BSgenome, Biostrings |
| SystemRequirements | |
| Enhances | parallel |
| URL | https://github.com/phaverty/genoset |
| Depends On Me | |
| Imports Me | methyAnalysis, VegaMC |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | genoset_1.28.2.tar.gz |
| Windows Binary | genoset_1.28.2.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | genoset_1.28.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/genoset/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/genoset/ |
| Package Downloads Report | Download Stats |
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