To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

In most cases, you don't need to download the package archive at all.

graphite

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 3.3

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graphite")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

PDF	R Script	GRAPH Interaction from pathway Topological Environment
PDF		Reference Manual
Text		NEWS

biocViews	BioCarta, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software, ThirdPartyClient
Version	1.18.1
In Bioconductor since	BioC 2.9 (R-2.14) (5 years)
License	AGPL-3
Depends	R (>= 2.10), BiocGenerics, methods
Imports	AnnotationDbi, graph, stats, utils, rappdirs
LinkingTo
Suggests	BiocStyle, hgu133plus2.db, org.Hs.eg.db, SPIA(>= 2.2), topologyGSA (>= 1.4.0), clipper, ALL, testthat
SystemRequirements
Enhances	DEGraph, RCytoscape, RCy3
URL
Depends On Me	ToPASeq
Imports Me	facopy, mogsa, ReactomePA
Suggests Me	clipper
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	graphite_1.18.1.tar.gz
Windows Binary	graphite_1.18.1.zip
Mac OS X 10.9 (Mavericks)	graphite_1.18.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/graphite/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/graphite/
Package Downloads Report	Download Stats

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