To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

In most cases, you don't need to download the package archive at all.

gwascat

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see gwascat.

representing and modeling data in the EMBL-EBI GWAS catalog

Bioconductor version: 3.3

Represent and model data in the EMBL-EBI GWAS catalog.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gwascat")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gwascat")

PDF	R Script	gwascat -- exploring NHGRI GWAS catalog
HTML	R Script	gwascat: exploring GWAS results using the experimental factor ontology
PDF		Reference Manual
Text		NEWS

biocViews	Genetics, Software
Version	2.4.2
In Bioconductor since	BioC 2.10 (R-2.15) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), Homo.sapiens
Imports	methods, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, snpStats, Biostrings, Rsamtools, rtracklayer, gQTLstats, Gviz, VariantAnnotation, AnnotationHub, AnnotationDbi, GenomicFeatures, graph, ggbio, ggplot2, SummarizedExperiment
LinkingTo
Suggests	DO.db, DT, utils, knitr, RBGL, RUnit, GGtools
SystemRequirements
Enhances	SNPlocs.Hsapiens.dbSNP144.GRCh37
URL
Depends On Me	vtpnet
Imports Me
Suggests Me	gQTLBase, grasp2db
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	gwascat_2.4.2.tar.gz
Windows Binary	gwascat_2.4.2.zip
Mac OS X 10.9 (Mavericks)	gwascat_2.4.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/gwascat/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/gwascat/
Package Downloads Report	Download Stats

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