To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("marray")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see marray.
Bioconductor version: 3.3
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>
Citation (from within R,
enter citation("marray")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("marray")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("marray")
R Script | marray Normalization | |
R Script | marray Overview | |
R Script | marrayClasses Overview | |
R Script | marrayClasses Tutorial (short) | |
R Script | marrayInput Introduction | |
R Script | marrayPlots Overview | |
Reference Manual | ||
Text | LICENSE |
biocViews | Microarray, Preprocessing, Software, TwoChannel |
Version | 1.50.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11.5 years) |
License | LGPL |
Depends | R (>= 2.10.0), limma, methods |
Imports | |
LinkingTo | |
Suggests | tkWidgets |
SystemRequirements | |
Enhances | |
URL | http://www.maths.usyd.edu.au/u/jeany/ |
Depends On Me | beta7, CGHbase, convert, dyebias, dyebiasexamples, FEM, maigesPack, MineICA, nnNorm, OLIN, RBM, stepNorm, TurboNorm |
Imports Me | arrayQuality, ChAMP, methylPipe, MSstats, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse |
Suggests Me | AgiMicroRna, DEGraph, Mfuzz |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | marray_1.50.0.tar.gz |
Windows Binary | marray_1.50.0.zip |
Mac OS X 10.9 (Mavericks) | marray_1.50.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/marray/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/marray/ |
Package Downloads Report | Download Stats |
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