To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("messina")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see messina.
Bioconductor version: 3.3
Messina is a collection of algorithms for constructing optimally robust single-gene classifiers, and for identifying differential expression in the presence of outliers or unknown sample subgroups. The methods have application in identifying lead features to develop into clinical tests (both diagnostic and prognostic), and in identifying differential expression when a fraction of samples show unusual patterns of expression.
Author: Mark Pinese [aut], Mark Pinese [cre], Mark Pinese [cph]
Maintainer: Mark Pinese <m.pinese at garvan.org.au>
Citation (from within R,
enter citation("messina")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("messina")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("messina")
R Script | Using Messina | |
Reference Manual | ||
Text | NEWS |
biocViews | BiomedicalInformatics, Classification, DifferentialExpression, GeneExpression, Software, Survival |
Version | 1.8.2 |
In Bioconductor since | BioC 2.14 (R-3.1) (2.5 years) |
License | EPL (>= 1.0) |
Depends | R (>= 3.1.0), survival (>= 2.37-4), methods |
Imports | Rcpp (>= 0.11.1), plyr (>= 1.8), ggplot2 (>= 0.9.3.1), grid (>= 3.1.0), foreach (>= 1.4.1), graphics |
LinkingTo | Rcpp |
Suggests | knitr (>= 1.5), antiProfilesData(>= 0.99.2), Biobase(>= 2.22.0), BiocStyle |
SystemRequirements | |
Enhances | doMC (>= 1.3.3) |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | messina_1.8.2.tar.gz |
Windows Binary | messina_1.8.2.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | messina_1.8.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/messina/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/messina/ |
Package Downloads Report | Download Stats |
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