To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaX")
In most cases, you don't need to download the package archive at all.
metaX
|
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see metaX.
An R package for metabolomic data analysis
Bioconductor version: 3.3
The package provides a integrated pipeline for mass spectrometry- based metabolomic data analysis. It includes the stages peak detection, data preprocessing, normalization, missing value imputation, univariate statistical analysis, multivariate statistical analysis such as PCA and PLS-DA, metabolite identification, pathway analysis, power analysis, feature selection and modeling, data quality assessment.
Author: Bo Wen <wenbo at genomics.cn>
Maintainer: Bo Wen <wenbo at genomics.cn>
Citation (from within R,
enter citation("metaX")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("metaX")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaX")
| R Script | metaX tutorial | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, QualityControl, Software |
| Version | 1.4.2 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | LGPL-2 |
| Depends | R (>= 3.2.0), VennDiagram, pROC, SSPA, methods |
| Imports | Nozzle.R1, ggplot2, parallel, pcaMethods, reshape2, plyr, BBmisc, mixOmics, preprocessCore, vsn, pls, impute, missForest, doParallel, DiscriMiner, xcms, ape, scatterplot3d, pheatmap, bootstrap, boot, caret, dplyr, stringr, RColorBrewer, DiffCorr, RCurl, lattice, faahKO, data.table, CAMERA, igraph, tidyr, scales |
| LinkingTo | |
| Suggests | knitr, BiocStyle, R.utils, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | http://wenbostar.github.io/metaX/ |
| BugReports | https://github.com/wenbostar/metaX/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | metaX_1.4.2.tar.gz |
| Windows Binary | metaX_1.4.2.zip |
| Mac OS X 10.9 (Mavericks) | metaX_1.4.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/metaX/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/metaX/ |
| Package Downloads Report | Download Stats |
Documentation »
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