- Home
- Bioconductor 3.3
- Software Packages
- networkBMA
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("networkBMA")
In most cases, you don't need to download the package archive at all.
networkBMA
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see networkBMA.
Regression-based network inference using Bayesian Model Averaging
Bioconductor version: 3.3
An extension of Bayesian Model Averaging (BMA) for network construction using time series gene expression data. Includes assessment functions and sample test data.
Author: Chris Fraley, Wm. Chad Young, Ka Yee Yeung, Adrian Raftery (with contributions from Kenneth Lo)
Maintainer: Ka Yee Yeung <kayee at u.washington.edu>
Citation (from within R,
enter citation("networkBMA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("networkBMA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("networkBMA")
| R Script | networkBMA | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bayesian, GeneExpression, GeneTarget, GraphsAndNetwork, Network, NetworkInference, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (4 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15.0), stats, utils, BMA, Rcpp (>= 0.10.3), RcppArmadillo (>= 0.3.810.2), RcppEigen (>= 0.3.1.2.1) |
| Imports | |
| LinkingTo | Rcpp, RcppArmadillo, RcppEigen |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DREAM4 |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | networkBMA_1.14.0.tar.gz |
| Windows Binary | networkBMA_1.14.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | networkBMA_1.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/networkBMA/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/networkBMA/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
