To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("openCyto")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see openCyto.
Bioconductor version: 3.3
This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.
Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo
Maintainer: Mike Jiang <wjiang2 at fhcrc.org>
Citation (from within R,
enter citation("openCyto")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("openCyto")
HTML | R Script | An Introduction to the openCyto package |
HTML | R Script | How to write a csv gating template |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software |
Version | 1.10.3 |
In Bioconductor since | BioC 2.13 (R-3.0) (3 years) |
License | Artistic-2.0 |
Depends | flowWorkspace(>= 3.17.43) |
Imports | methods, Biobase, gtools, flowCore(>= 1.31.17), flowViz, ncdfFlow(>= 2.11.34), flowWorkspace, flowStats(>= 3.29.1), flowClust, MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils |
LinkingTo | Rcpp |
Suggests | flowWorkspaceData, knitr, testthat, utils, tools, parallel |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | flowCore, ggcyto |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | openCyto_1.10.3.tar.gz |
Windows Binary | openCyto_1.10.3.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | openCyto_1.10.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/openCyto/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/openCyto/ |
Package Downloads Report | Download Stats |
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