To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("seqCNA")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see seqCNA.
Bioconductor version: 3.3
Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization
Author: David Mosen-Ansorena
Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>
Citation (from within R,
enter citation("seqCNA")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("seqCNA")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqCNA")
R Script | seqCNA | |
Reference Manual |
biocViews | CopyNumberVariation, Genetics, Sequencing, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (3 years) |
License | GPL-3 |
Depends | R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | samtools |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | seqCNA_1.18.0.tar.gz |
Windows Binary | seqCNA_1.18.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | seqCNA_1.18.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/seqCNA/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/seqCNA/ |
Package Downloads Report | Download Stats |
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