- Home
- Bioconductor 3.3
- Experiment Packages
- ABAData
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABAData")
In most cases, you don't need to download the package archive at all.
ABAData
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ABAData.
Averaged gene expression in human brain regions from Allen Brain Atlas
Bioconductor version: 3.3
Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.
Author: Steffi Grote
Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>
Citation (from within R,
enter citation("ABAData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABAData")
Documentation
| HTML | R Script | ABAData: gene expression data to use with enrichment analysis package ABAEnrichment |
| Reference Manual |
Details
| biocViews | ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData |
| Version | 1.2.2 |
| License | GPL (>= 2) |
| Depends | R (>= 3.2) |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | ABAEnrichment |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ABAData_1.2.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/ABAData/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
