To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCHiCdata")

In most cases, you don't need to download the package archive at all.

PCHiCdata

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see PCHiCdata.

Promoter Capture Hi-C data

Bioconductor version: 3.3

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov

Maintainer: Paula Freire-Pritchett <paula.freire-pritchett at babraham.ac.uk>

Citation (from within R, enter citation("PCHiCdata")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCHiCdata")

Documentation

HTML	R Script	PCHiCdata Vignette
PDF		Reference Manual

Details

biocViews	ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell
Version	1.0.2
License	Artistic-2.0
Depends	R (>= 3.2), Chicago
Imports
LinkingTo
Suggests	testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	Chicago
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	PCHiCdata_1.0.2.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/PCHiCdata/
Package Downloads Report	Download Stats

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