To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PasillaTranscriptExpr")

In most cases, you don't need to download the package archive at all.

PasillaTranscriptExpr

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see PasillaTranscriptExpr.

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Bioconductor version: 3.3

Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.

Author: Malgorzata Nowicka [aut, cre]

Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>

Citation (from within R, enter citation("PasillaTranscriptExpr")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PasillaTranscriptExpr")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PasillaTranscriptExpr")

PDF	R Script	Generation of transcript counts from pasilla dataset with kallisto
PDF		Reference Manual
Text		NEWS

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData
Version	1.0.2
License	GPL (>= 3)
Depends	R (>= 3.3.0)
Imports
LinkingTo
Suggests	rtracklayer, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	DRIMSeq
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	PasillaTranscriptExpr_1.0.2.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/PasillaTranscriptExpr/
Package Downloads Report	Download Stats

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