AIMS

DOI: 10.18129/B9.bioc.AIMS    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see AIMS.

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Bioconductor version: 3.8

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author: Eric R. Paquet, Michael T. Hallett

Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("AIMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AIMS")

 

PDF	R Script	AIMS An Introduction (HowTo)
PDF		Reference Manual
Text		README

Details

biocViews	Classification, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software
Version	1.14.1
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	Artistic-2.0
Depends	R (>= 2.10), e1071, Biobase
Imports
LinkingTo
Suggests	breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL	http://www.bci.mcgill.ca/AIMS
Depends On Me	genefu
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AIMS_1.14.1.tar.gz
Windows Binary	AIMS_1.14.1.zip
Mac OS X 10.11 (El Capitan)	AIMS_1.14.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AIMS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AIMS
Package Short Url	http://bioconductor.org/packages/AIMS/
Package Downloads Report	Download Stats