AffyCompatible

DOI: 10.18129/B9.bioc.AffyCompatible    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see AffyCompatible.

Affymetrix GeneChip software compatibility

Bioconductor version: 3.8

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Author: Martin Morgan, Robert Gentleman

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("AffyCompatible")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyCompatible")

 

PDF	R Script	Annotation retrieval with NetAffxResource
PDF	R Script	Retrieving MAGE and ARR sample attributes
PDF		Reference Manual

Details

biocViews	Infrastructure, Microarray, OneChannel, Software
Version	1.42.0
In Bioconductor since	BioC 2.2 (R-2.7) (11 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods
Imports	Biostrings
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	IdMappingRetrieval
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AffyCompatible_1.42.0.tar.gz
Windows Binary	AffyCompatible_1.42.0.zip
Mac OS X 10.11 (El Capitan)	AffyCompatible_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AffyCompatible
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AffyCompatible
Package Short Url	http://bioconductor.org/packages/AffyCompatible/
Package Downloads Report	Download Stats