ArrayTV

DOI: 10.18129/B9.bioc.ArrayTV    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ArrayTV.

Implementation of wave correction for arrays

Bioconductor version: 3.8

Wave correction for genotyping and copy number arrays

Author: Eitan Halper-Stromberg

Maintainer: Eitan Halper-Stromberg <Eitan177 at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ArrayTV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayTV")

 

PDF	R Script	ArrayTV Vignette
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Software
Version	1.20.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	GPL (>= 2)
Depends	R (>= 2.14)
Imports	methods, foreach, S4Vectors(>= 0.9.25), IRanges(>= 2.13.24), DNAcopy, oligoClasses(>= 1.21.3)
LinkingTo
Suggests	RColorBrewer, crlmm, ff, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, lattice, latticeExtra, RUnit, BiocGenerics
SystemRequirements
Enhances	doMC, doSNOW, doParallel
URL
Depends On Me
Imports Me
Suggests Me	VanillaICE
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ArrayTV_1.20.0.tar.gz
Windows Binary	ArrayTV_1.20.0.zip
Mac OS X 10.11 (El Capitan)	ArrayTV_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ArrayTV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayTV
Package Short Url	http://bioconductor.org/packages/ArrayTV/
Package Downloads Report	Download Stats