BEAT

DOI: 10.18129/B9.bioc.BEAT    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BEAT.

BEAT - BS-Seq Epimutation Analysis Toolkit

Bioconductor version: 3.8

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")

 

PDF	R Script	Analysing single-cell BS-Seq data with the "BEAT" package
PDF		Reference Manual

Details

biocViews	DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version	1.20.1
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	LGPL (>= 3.0)
Depends	R (>= 2.13.0)
Imports	GenomicRanges, ShortRead, Biostrings, BSgenome
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BEAT_1.20.1.tar.gz
Windows Binary	BEAT_1.20.1.zip
Mac OS X 10.11 (El Capitan)	BEAT_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BEAT
Package Short Url	http://bioconductor.org/packages/BEAT/
Package Downloads Report	Download Stats