BioSeqClass

DOI: 10.18129/B9.bioc.BioSeqClass    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BioSeqClass.

Classification for Biological Sequences

Bioconductor version: 3.8

Extracting Features from Biological Sequences and Building Classification Model

Author: Li Hong sysptm@gmail.com

Maintainer: Li Hong <sysptm at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BioSeqClass")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioSeqClass")

 

PDF	R Script	Using the BioSeqClass Package
PDF		Reference Manual

Details

biocViews	Classification, Software
Version	1.40.0
In Bioconductor since	BioC 2.5 (R-2.10) (9.5 years)
License	LGPL (>= 2.0)
Depends	R (>= 2.10), scatterplot3d
Imports	Biostrings, ipred, e1071, klaR, randomForest, class, tree, nnet, rpart, party, foreign, Biobase, utils, stats, grDevices
LinkingTo
Suggests	scatterplot3d
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioSeqClass_1.40.0.tar.gz
Windows Binary	BioSeqClass_1.40.0.zip
Mac OS X 10.11 (El Capitan)	BioSeqClass_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioSeqClass
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioSeqClass
Package Short Url	http://bioconductor.org/packages/BioSeqClass/
Package Downloads Report	Download Stats