CGHnormaliter

DOI: 10.18129/B9.bioc.CGHnormaliter    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CGHnormaliter.

Normalization of array CGH data with imbalanced aberrations.

Bioconductor version: 3.8

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("CGHnormaliter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHnormaliter")

 

PDF	R Script	CGHnormaliter
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software
Version	1.36.0
In Bioconductor since	BioC 2.5 (R-2.10) (9.5 years)
License	GPL (>= 3)
Depends	CGHcall(>= 2.17.0), CGHbase(>= 1.15.0)
Imports	Biobase, CGHbase, CGHcall, methods, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CGHnormaliter_1.36.0.tar.gz
Windows Binary	CGHnormaliter_1.36.0.zip
Mac OS X 10.11 (El Capitan)	CGHnormaliter_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CGHnormaliter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CGHnormaliter
Package Short Url	http://bioconductor.org/packages/CGHnormaliter/
Package Downloads Report	Download Stats