ChIPComp

DOI: 10.18129/B9.bioc.ChIPComp    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ChIPComp.

Quantitative comparison of multiple ChIP-seq datasets

Bioconductor version: 3.8

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at emory.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ChIPComp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPComp")

 

PDF	R Script	ChIPComp
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL
Depends	R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors
Imports	Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics
LinkingTo
Suggests	BiocStyle, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChIPComp_1.12.0.tar.gz
Windows Binary	ChIPComp_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ChIPComp_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ChIPComp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChIPComp
Package Short Url	http://bioconductor.org/packages/ChIPComp/
Package Downloads Report	Download Stats