DirichletMultinomial

DOI: 10.18129/B9.bioc.DirichletMultinomial    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DirichletMultinomial.

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Bioconductor version: 3.8

Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.

Author: Martin Morgan <martin.morgan at roswellpark.org>

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DirichletMultinomial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DirichletMultinomial")

 

PDF	R Script	An introduction to DirichletMultinomial
PDF		Reference Manual

Details

biocViews	Classification, Clustering, ImmunoOncology, Metagenomics, Microbiome, Sequencing, Software
Version	1.24.1
In Bioconductor since	BioC 2.11 (R-2.15) (6.5 years)
License	LGPL-3
Depends	S4Vectors, IRanges
Imports	stats4, methods, BiocGenerics
LinkingTo
Suggests	lattice, parallel, MASS, RColorBrewer, xtable
SystemRequirements	gsl
Enhances
URL
Depends On Me
Imports Me	TFBSTools
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DirichletMultinomial_1.24.1.tar.gz
Windows Binary	DirichletMultinomial_1.24.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	DirichletMultinomial_1.24.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DirichletMultinomial
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DirichletMultinomial
Package Short Url	http://bioconductor.org/packages/DirichletMultinomial/
Package Downloads Report	Download Stats