ExpressionView

DOI: 10.18129/B9.bioc.ExpressionView    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ExpressionView.

Visualize biclusters identified in gene expression data

Bioconductor version: 3.8

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ExpressionView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExpressionView")

 

PDF	R Script	ExpressionView
PDF		ExpressionView file format
PDF	R Script	How the ordering algorithm works
PDF		Reference Manual

Details

biocViews	Classification, GO, GeneExpression, KEGG, Microarray, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.6 (R-2.11) (9 years)
License	GPL (>= 2)
Depends	caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Imports	methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
LinkingTo
Suggests	ALL, hgu95av2.db, biclust, affy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ExpressionView_1.34.0.tar.gz
Windows Binary	ExpressionView_1.34.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ExpressionView_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ExpressionView
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExpressionView
Package Short Url	http://bioconductor.org/packages/ExpressionView/
Package Downloads Report	Download Stats