GOsummaries

DOI: 10.18129/B9.bioc.GOsummaries    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GOsummaries.

Word cloud summaries of GO enrichment analysis

Bioconductor version: 3.8

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

Author: Raivo Kolde <raivo.kolde at eesti.ee>

Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GOsummaries")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOsummaries")

 

PDF	R Script	GOsummaries basics
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GO, GeneExpression, Software, Visualization
Version	2.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	GPL (>= 2)
Depends	R (>= 2.15), Rcpp
Imports	plyr, grid, gProfileR, reshape2, limma, ggplot2, gtable
LinkingTo	Rcpp
Suggests	vegan
SystemRequirements
Enhances
URL	https://github.com/raivokolde/GOsummaries
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GOsummaries_2.18.0.tar.gz
Windows Binary	GOsummaries_2.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GOsummaries_2.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GOsummaries
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOsummaries
Package Short Url	http://bioconductor.org/packages/GOsummaries/
Package Downloads Report	Download Stats