This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GWASTools.
Bioconductor version: 3.8
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.
Author: Stephanie M. Gogarten, Cathy Laurie, Tushar Bhangale, Matthew P. Conomos, Cecelia Laurie, Michael Lawrence, Caitlin McHugh, Ian Painter, Xiuwen Zheng, Jess Shen, Rohit Swarnkar, Adrienne Stilp, Sarah Nelson
Maintainer: Stephanie M. Gogarten <sdmorris at uw.edu>
Citation (from within R,
enter citation("GWASTools")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GWASTools")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GWASTools")
R Script | Data formats in GWASTools | |
R Script | GWAS Data Cleaning | |
R Script | Preparing Affymetrix Data | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneticVariability, Microarray, QualityControl, SNP, Software |
Version | 1.28.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (7.5 years) |
License | Artistic-2.0 |
Depends | Biobase |
Imports | graphics, stats, utils, methods, gdsfmt, DBI, RSQLite, GWASExactHW, DNAcopy, survival, sandwich, lmtest, logistf, quantsmooth |
LinkingTo | |
Suggests | ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings, GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors, VariantAnnotation |
SystemRequirements | |
Enhances | |
URL | https://github.com/smgogarten/GWASTools |
Depends On Me | GWASdata |
Imports Me | GENESIS, gwasurvivr |
Suggests Me | podkat |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GWASTools_1.28.0.tar.gz |
Windows Binary | GWASTools_1.28.0.zip |
Mac OS X 10.11 (El Capitan) | GWASTools_1.28.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GWASTools |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GWASTools |
Package Short Url | http://bioconductor.org/packages/GWASTools/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: