HybridMTest

DOI: 10.18129/B9.bioc.HybridMTest    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HybridMTest.

Hybrid Multiple Testing

Bioconductor version: 3.8

Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.

Author: Stan Pounds <stanley.pounds at stjude.org>, Demba Fofana <demba.fofana at stjude.org>

Maintainer: Demba Fofana <demba.fofana at stjude.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("HybridMTest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HybridMTest")

 

PDF	R Script	Hybrid Multiple Testing
PDF		Reference Manual

Details

biocViews	GeneExpression, Genetics, Microarray, Software
Version	1.26.0
In Bioconductor since	BioC 2.10 (R-2.15) (7 years)
License	GPL Version 2 or later
Depends	R (>= 2.9.0), Biobase, fdrtool, MASS, survival
Imports	stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HybridMTest_1.26.0.tar.gz
Windows Binary	HybridMTest_1.26.0.zip
Mac OS X 10.11 (El Capitan)	HybridMTest_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HybridMTest
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HybridMTest
Package Short Url	http://bioconductor.org/packages/HybridMTest/
Package Downloads Report	Download Stats