IMMAN

DOI: 10.18129/B9.bioc.IMMAN    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see IMMAN.

Interlog protein network reconstruction by Mapping and Mining ANalysis

Bioconductor version: 3.8

Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

Author: Payman Nickchi, Abdollah Safari, Minoo Ashtiani, Mohieddin Jafari

Maintainer: Minoo Ashtiani <m_ashtiani at pasteur.ac.ir>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("IMMAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMMAN")

 

HTML	R Script	IMMAN
PDF		Reference Manual

Details

biocViews	Alignment, GraphAndNetwork, Network, Proteomics, SequenceMatching, Software, SystemsBiology
Version	1.2.0
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	Artistic-2.0
Depends
Imports	STRINGdb, Biostrings, igraph, graphics, utils, seqinr, BiocFileCache
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IMMAN_1.2.0.tar.gz
Windows Binary	IMMAN_1.2.0.zip
Mac OS X 10.11 (El Capitan)	IMMAN_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IMMAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IMMAN
Package Short Url	http://bioconductor.org/packages/IMMAN/
Package Downloads Report	Download Stats