KCsmart

DOI: 10.18129/B9.bioc.KCsmart    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see KCsmart.

Multi sample aCGH analysis package using kernel convolution

Bioconductor version: 3.8

Multi sample aCGH analysis package using kernel convolution

Author: Jorma de Ronde, Christiaan Klijn, Arno Velds

Maintainer: Jorma de Ronde <j.d.ronde at nki.nl>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("KCsmart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KCsmart")

 

PDF	R Script	KCsmart example session
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software, Visualization, aCGH
Version	2.40.0
In Bioconductor since	BioC 2.3 (R-2.8) (10.5 years)
License	GPL-3
Depends	siggenes, multtest, KernSmooth
Imports	methods, BiocGenerics
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Suggests
SystemRequirements
Enhances	Biobase, CGHbase
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KCsmart_2.40.0.tar.gz
Windows Binary	KCsmart_2.40.0.zip
Mac OS X 10.11 (El Capitan)	KCsmart_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/KCsmart
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KCsmart
Package Short Url	http://bioconductor.org/packages/KCsmart/
Package Downloads Report	Download Stats