LINC

DOI: 10.18129/B9.bioc.LINC    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see LINC.

co-expression of lincRNAs and protein-coding genes

Bioconductor version: 3.8

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("LINC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LINC")

 

HTML	R Script	LINC - Co-Expression Analysis of lincRNAs
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiologicalQuestion, GeneExpression, GeneRegulation, Software
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.1), methods, stats
Imports	Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA
LinkingTo	Rcpp
Suggests	RUnit, BiocGenerics, knitr, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LINC_1.10.0.tar.gz
Windows Binary	LINC_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	LINC_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LINC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LINC
Package Short Url	http://bioconductor.org/packages/LINC/
Package Downloads Report	Download Stats