This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MTseeker.
Bioconductor version: 3.8
Variant analysis tools for mitochondrial genetics.
Author: Tim Triche [cre, aut], Noor Sohail [aut], Ben Johnson [aut], Tim Vickers [ctb], Azif Zubair [ctb]
Maintainer: Tim Triche <tim.triche at gmail.com>
Citation (from within R,
enter citation("MTseeker")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MTseeker")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MTseeker")
HTML | R Script | MTseeker example |
Reference Manual |
biocViews | Genetics, Metabolomics, Software, VariantAnnotation |
Version | 1.0.6 |
In Bioconductor since | BioC 3.8 (R-3.5) (0.5 years) |
License | GPL-3 |
Depends | viridis, S4Vectors, GenomeInfoDb, GenomicAlignments, VariantAnnotation |
Imports | xml2, utils, gmapR, methods, IRanges, Biobase, circlize, jsonlite, graphics, Rsamtools, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, GenomicFeatures, SummarizedExperiment |
LinkingTo | |
Suggests | MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | MTseekerData |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MTseeker_1.0.6.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | MTseeker_1.0.6.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MTseeker |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MTseeker |
Package Short Url | http://bioconductor.org/packages/MTseeker/ |
Package Downloads Report | Download Stats |
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