This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.
Bioconductor version: 3.8
The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.
Author: Y-h. Taguchi <tag at granular.com>
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R,
enter citation("MiRaGE")
):
To install this package, start R (version "3.5") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MiRaGE")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiRaGE")
R Script | How to use MiRaGE Package | |
Reference Manual |
biocViews | GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software |
Version | 1.24.1 |
In Bioconductor since | BioC 2.11 (R-2.15) (6.5 years) |
License | GPL |
Depends | R (>= 3.1.0), Biobase(>= 2.23.3) |
Imports | BiocGenerics, S4Vectors, AnnotationDbi, BiocManager |
LinkingTo | |
Suggests | seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MiRaGE_1.24.1.tar.gz |
Windows Binary | MiRaGE_1.24.1.zip |
Mac OS X 10.11 (El Capitan) | MiRaGE_1.24.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MiRaGE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MiRaGE |
Package Short Url | http://bioconductor.org/packages/MiRaGE/ |
Package Downloads Report | Download Stats |
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