NCIgraph

DOI: 10.18129/B9.bioc.NCIgraph    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see NCIgraph.

Pathways from the NCI Pathways Database

Bioconductor version: 3.8

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("NCIgraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")

 

PDF	R Script	NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, Pathways, Software
Version	1.30.0
In Bioconductor since	BioC 2.8 (R-2.13) (8 years)
License	GPL-3
Depends	R (>= 2.10.0)
Imports	graph, KEGGgraph, methods, RBGL, RCy3, R.methodsS3
LinkingTo
Suggests	Rgraphviz
SystemRequirements
Enhances	DEGraph
URL
Depends On Me
Imports Me	DEGraph
Suggests Me	DEGraph
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NCIgraph_1.30.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/NCIgraph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NCIgraph
Package Short Url	http://bioconductor.org/packages/NCIgraph/
Package Downloads Report	Download Stats