NetSAM

DOI: 10.18129/B9.bioc.NetSAM    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see NetSAM.

Network Seriation And Modularization

Bioconductor version: 3.8

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author: Jing Wang <jing.wang.2 at vanderbilt.edu>

Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("NetSAM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NetSAM")

 

PDF	R Script	NetSAM
PDF		Reference Manual

Details

biocViews	Network, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	LGPL
Depends	R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports	methods
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NetSAM_1.22.0.tar.gz
Windows Binary	NetSAM_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	NetSAM_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NetSAM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NetSAM
Package Short Url	http://bioconductor.org/packages/NetSAM/
Package Downloads Report	Download Stats