PCAN

DOI: 10.18129/B9.bioc.PCAN    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PCAN.

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: 3.8

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCAN")

 

HTML	R Script	Assessing gene relevance for a set of phenotypes
PDF		Reference Manual

Details

biocViews	Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version	1.10.0
In Bioconductor since	BioC 3.3 (R-3.3) (3 years)
License	CC BY-NC-ND 4.0
Depends	R (>= 3.3), BiocParallel
Imports	grDevices, stats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PCAN_1.10.0.tar.gz
Windows Binary	PCAN_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	PCAN_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PCAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PCAN
Package Short Url	http://bioconductor.org/packages/PCAN/
Package Downloads Report	Download Stats