PROPER

DOI: 10.18129/B9.bioc.PROPER    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PROPER.

PROspective Power Evaluation for RNAseq

Bioconductor version: 3.8

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

Author: Hao Wu

Maintainer: Hao Wu <hao.wu at emory.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PROPER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPER")

 

PDF	R Script	Power and Sample size analysis for gene expression from RNA-seq
PDF		Reference Manual

Details

biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version	1.14.1
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	GPL
Depends	R (>= 3.3)
Imports	edgeR
LinkingTo
Suggests	BiocStyle, DESeq, DSS, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PROPER_1.14.1.tar.gz
Windows Binary	PROPER_1.14.1.zip
Mac OS X 10.11 (El Capitan)	PROPER_1.14.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PROPER
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PROPER
Package Short Url	http://bioconductor.org/packages/PROPER/
Package Downloads Report	Download Stats