PROPS

DOI: 10.18129/B9.bioc.PROPS    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PROPS.

PRObabilistic Pathway Score (PROPS)

Bioconductor version: 3.8

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at stanford.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PROPS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PROPS")

 

HTML	R Script	PRObabilistic Pathway Scores (PROPS)
PDF		Reference Manual

Details

biocViews	Bayesian, Classification, GeneExpression, Software
Version	1.4.0
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	GPL-2
Depends
Imports	bnlearn, reshape2, sva, stats, utils, Biobase
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PROPS_1.4.0.tar.gz
Windows Binary	PROPS_1.4.0.zip
Mac OS X 10.11 (El Capitan)	PROPS_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PROPS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PROPS
Package Short Url	http://bioconductor.org/packages/PROPS/
Package Downloads Report	Download Stats