Path2PPI

DOI: 10.18129/B9.bioc.Path2PPI    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Path2PPI.

Prediction of pathway-related protein-protein interaction networks

Bioconductor version: 3.8

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Author: Oliver Philipp [aut, cre], Ina Koch [ctb]

Maintainer: Oliver Philipp <contact at oliverphilipp.info>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Path2PPI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Path2PPI")

 

HTML	R Script	Path2PPI - A brief tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL (>= 2)
Depends	R (>= 3.2.1), igraph (>= 1.0.1), methods
Imports
LinkingTo
Suggests	knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL	http://www.bioinformatik.uni-frankfurt.de/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Path2PPI_1.12.0.tar.gz
Windows Binary	Path2PPI_1.12.0.zip
Mac OS X 10.11 (El Capitan)	Path2PPI_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Path2PPI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Path2PPI
Package Short Url	http://bioconductor.org/packages/Path2PPI/
Package Downloads Report	Download Stats