RDRToolbox

DOI: 10.18129/B9.bioc.RDRToolbox    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RDRToolbox.

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 3.8

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RDRToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")

 

PDF	R Script	A package for nonlinear dimension reduction with Isomap and LLE.
PDF		Reference Manual

Details

biocViews	Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version	1.32.0
In Bioconductor since	BioC 2.7 (R-2.12) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 2.9.0)
Imports	graphics, grDevices, methods, stats, MASS, rgl
LinkingTo
Suggests	golubEsets
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RDRToolbox_1.32.0.tar.gz
Windows Binary	RDRToolbox_1.32.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	RDRToolbox_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RDRToolbox
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RDRToolbox
Package Short Url	http://bioconductor.org/packages/RDRToolbox/
Package Downloads Report	Download Stats