RedeR

DOI: 10.18129/B9.bioc.RedeR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: 3.8

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

 

HTML	R Script	RedeR: hierarchical network representation
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version	1.30.0
In Bioconductor since	BioC 2.9 (R-2.14) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 3.3.3), methods
Imports	igraph
LinkingTo
Suggests	pvclust, BiocStyle, knitr, rmarkdown
SystemRequirements	Java Runtime Environment (>= 6)
Enhances
URL	http://genomebiology.com/2012/13/4/R29
Depends On Me	Fletcher2013b
Imports Me	Mulder2012, PANR, RTN, transcriptogramer
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RedeR_1.30.0.tar.gz
Windows Binary	RedeR_1.30.0.zip
Mac OS X 10.11 (El Capitan)	RedeR_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RedeR
Package Short Url	http://bioconductor.org/packages/RedeR/
Package Downloads Report	Download Stats