SAGx

DOI: 10.18129/B9.bioc.SAGx    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SAGx.

Statistical Analysis of the GeneChip

Bioconductor version: 3.8

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author: Per Broberg

Maintainer: Per Broberg, <pi.broberg at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SAGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SAGx")

 

PDF	R Script	samroc - example
PDF		Reference Manual

Details

biocViews	Clustering, DataImport, DifferentialExpression, GeneExpression, GeneSetEnrichment, KEGG, Microarray, MultipleComparison, OneChannel, Pathways, Preprocessing, Regression, Software
Version	1.56.0
In Bioconductor since	BioC 1.9 (R-2.4) (12.5 years)
License	GPL-3
Depends	R (>= 2.5.0), stats, multtest, methods
Imports	Biobase, stats4
LinkingTo
Suggests	KEGG.db, hu6800.db, MASS
SystemRequirements
Enhances
URL	http://home.swipnet.se/pibroberg/expression_hemsida1.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SAGx_1.56.0.tar.gz
Windows Binary	SAGx_1.56.0.zip
Mac OS X 10.11 (El Capitan)	SAGx_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SAGx
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SAGx
Package Short Url	http://bioconductor.org/packages/SAGx/
Package Downloads Report	Download Stats