SNAGEE

DOI: 10.18129/B9.bioc.SNAGEE    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SNAGEE.

Signal-to-Noise applied to Gene Expression Experiments

Bioconductor version: 3.8

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

Author: David Venet <davenet at ulb.ac.be>

Maintainer: David Venet <davenet at ulb.ac.be>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SNAGEE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNAGEE")

 

PDF	R Script	SNAGEE Vignette
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Software, TwoChannel
Version	1.22.0
In Bioconductor since	BioC 2.12 (R-3.0) (6 years)
License	Artistic-2.0
Depends	R (>= 2.6.0), SNAGEEdata
Imports
LinkingTo
Suggests	ALL, hgu95av2.db
SystemRequirements
Enhances	parallel
URL	http://bioconductor.org/
Depends On Me
Imports Me
Suggests Me	SNAGEEdata
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNAGEE_1.22.0.tar.gz
Windows Binary	SNAGEE_1.22.0.zip
Mac OS X 10.11 (El Capitan)	SNAGEE_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SNAGEE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SNAGEE
Package Short Url	http://bioconductor.org/packages/SNAGEE/
Package Downloads Report	Download Stats